Reference-based genotyping of 168 sunflower transcriptomes

ESTs from a variety of cultivated and wild sunflowers were produced via Sanger, 454, and Illumina sequencing. Each sample's ID, species, subspecies or ecotype, and technology used for sequencing is presented in the table of metadata below. Reads were aligned to the TranscriptomeRef_mar30.fa reference assembly using BWA and individuals were genotyped with SAMtools. Indels were excluded. Genotypes are presented in a tab-delimited table with reference sites in rows, and individuals in columns. See the bottom of this page for a descriptive table of the accessions used in genotyping.

Accessions